STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf170E3 ubiquitin-protein ligase RNF170 isoform X1. (249 aa)    
Predicted Functional Partners:
LOC107599877
Transmembrane and ubiquitin-like domain-containing protein 1.
    
 
 0.679
LOC107557000
Transmembrane and ubiquitin-like domain-containing protein 1.
    
 
 0.679
LOC107601865
Erlin-1.
    
 
 0.664
ENSSGRP00000040811
ER lipid raft associated 1.
    
 
 0.664
ube2j1
Ubiquitin-conjugating enzyme E2 J1.
    
 
 0.650
ENSSGRP00000045066
Ubiquitin-conjugating enzyme E2, J1.
    
 
 0.650
LOC107596165
Erlin-2.
    
 
 0.639
ENSSGRP00000086381
Erlin-2-like.
    
 
 0.639
LOC107574011
Calcium-binding protein 1/2/4/5.
      
 0.611
C6orf120
UPF0669 protein C6orf120 homolog.
      
 0.610
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.