Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ENSSGRP00000001108Tetratricopeptide repeat domain 27. (773 aa)    
Predicted Functional Partners:
LOC107580566
E2F-associated phosphoprotein-like.
    
 
 0.872
eftud2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.855
ENSSGRP00000036461
annotation not available
   
 
 0.855
ENSSGRP00000067252
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.855
LOC107592947
Neurochondrin-like.
    
 
 0.841
ncdn
Neurochondrin.
    
 
 0.841
ENSSGRP00000005040
Sulfite oxidase.
    
   0.840
LOC107562243
Sulfite oxidase-like.
    
   0.840
ENSSGRP00000082485
LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
   
 
 0.827
LOC107602857
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 
 0.827
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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