Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107587871Casein kinase II subunit alpha. (331 aa)    
Predicted Functional Partners:
LOC107584313
Casein kinase II subunit beta.
   
 0.976
LOC107584313-2
Casein kinase II subunit beta.
   
 0.976
LOC107574555
FACT complex subunit SPT16-like.
   
 0.881
LOC107570993
Catenin beta-1 isoform X1.
    
 0.844
ENSSGRP00000067405
Catenin beta-1-like.
    
 0.844
LOC107564810
FUN14 domain-containing protein 1-like isoform X1.
   
 0.836
LOC107595886
FUN14 domain-containing protein 1-like.
   
 0.836
LOC107565940
FUN14 domain-containing protein 1.
   
 0.836
LOC107599945
Cellular tumor antigen p53.
    
 0.822
LOC107592291
Cellular tumor antigen p53-like.
    
 0.822
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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