DGKD protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DGKD

Diacylglycerol kinase (ATP). (1159 aa)

Predicted Functional Partners:

ENSSGRP00000047575

0.770

ENSSGRP00000066847

0.698

ENSSGRP00000015459

0.678

agpat3

0.678

ENSSGRP00000067832

0.678

ENSSGRP00000068249

0.678

ENSSGRP00000098341

0.678

agpat5

0.678

LOC107553282

0.677

ENSSGRP00000054400

0.677

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DGKD	ENSSGRP00000015459	ENSSGRP00000001139	ENSSGRP00000015459	Diacylglycerol kinase (ATP).	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.678
DGKD	ENSSGRP00000047575	ENSSGRP00000001139	ENSSGRP00000047575	Diacylglycerol kinase (ATP).	Extra spindle pole bodies like 1, separase.	0.770
DGKD	ENSSGRP00000054400	ENSSGRP00000001139	ENSSGRP00000054400	Diacylglycerol kinase (ATP).	Membrane-bound O-acyltransferase domain-containing protein 2-like.	0.677
DGKD	ENSSGRP00000066847	ENSSGRP00000001139	ENSSGRP00000066847	Diacylglycerol kinase (ATP).	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1-like.	0.698
DGKD	ENSSGRP00000067832	ENSSGRP00000001139	ENSSGRP00000067832	Diacylglycerol kinase (ATP).	1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon-like.	0.678
DGKD	ENSSGRP00000068249	ENSSGRP00000001139	ENSSGRP00000068249	Diacylglycerol kinase (ATP).	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.678
DGKD	ENSSGRP00000098341	ENSSGRP00000001139	ENSSGRP00000098341	Diacylglycerol kinase (ATP).	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.678
DGKD	LOC107553282	ENSSGRP00000001139	ENSSGRP00000027741	Diacylglycerol kinase (ATP).	Membrane-bound O-acyltransferase domain-containing protein 2-like.	0.677
DGKD	agpat3	ENSSGRP00000001139	ENSSGRP00000064608	Diacylglycerol kinase (ATP).	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.678
DGKD	agpat5	ENSSGRP00000001139	ENSSGRP00000107608	Diacylglycerol kinase (ATP).	1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon.	0.678
ENSSGRP00000015459	DGKD	ENSSGRP00000015459	ENSSGRP00000001139	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	Diacylglycerol kinase (ATP).	0.678
ENSSGRP00000015459	ENSSGRP00000054400	ENSSGRP00000015459	ENSSGRP00000054400	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	Membrane-bound O-acyltransferase domain-containing protein 2-like.	0.406
ENSSGRP00000015459	LOC107553282	ENSSGRP00000015459	ENSSGRP00000027741	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	Membrane-bound O-acyltransferase domain-containing protein 2-like.	0.406
ENSSGRP00000047575	DGKD	ENSSGRP00000047575	ENSSGRP00000001139	Extra spindle pole bodies like 1, separase.	Diacylglycerol kinase (ATP).	0.770
ENSSGRP00000054400	DGKD	ENSSGRP00000054400	ENSSGRP00000001139	Membrane-bound O-acyltransferase domain-containing protein 2-like.	Diacylglycerol kinase (ATP).	0.677
ENSSGRP00000054400	ENSSGRP00000015459	ENSSGRP00000054400	ENSSGRP00000015459	Membrane-bound O-acyltransferase domain-containing protein 2-like.	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.406
ENSSGRP00000054400	ENSSGRP00000067832	ENSSGRP00000054400	ENSSGRP00000067832	Membrane-bound O-acyltransferase domain-containing protein 2-like.	1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon-like.	0.406
ENSSGRP00000054400	ENSSGRP00000068249	ENSSGRP00000054400	ENSSGRP00000068249	Membrane-bound O-acyltransferase domain-containing protein 2-like.	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.406
ENSSGRP00000054400	ENSSGRP00000098341	ENSSGRP00000054400	ENSSGRP00000098341	Membrane-bound O-acyltransferase domain-containing protein 2-like.	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.406
ENSSGRP00000054400	agpat3	ENSSGRP00000054400	ENSSGRP00000064608	Membrane-bound O-acyltransferase domain-containing protein 2-like.	Lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase.	0.406