TIMM8A protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TIMM8A

Mitochondrial import inner membrane translocase subunit Tim8 A-like. (100 aa)

Predicted Functional Partners:

LOC107587003

0.990

LOC107593051

0.990

LOC107556822

0.982

LOC107551571

0.982

ENSSGRP00000002517

0.952

ENSSGRP00000061725

0.952

timm9

0.952

LOC107556877

0.866

ENSSGRP00000087471

0.866

ENSSGRP00000087472

0.866

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002517	ENSSGRP00000087471	ENSSGRP00000002517	ENSSGRP00000087471	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	0.935
ENSSGRP00000002517	ENSSGRP00000087472	ENSSGRP00000002517	ENSSGRP00000087472	annotation not available	annotation not available	0.935
ENSSGRP00000002517	LOC107551571	ENSSGRP00000002517	ENSSGRP00000076693	annotation not available	Mitochondrial import inner membrane translocase subunit TIM10.	0.995
ENSSGRP00000002517	LOC107556822	ENSSGRP00000002517	ENSSGRP00000072772	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10-like.	0.995
ENSSGRP00000002517	LOC107556877	ENSSGRP00000002517	ENSSGRP00000081920	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	0.935
ENSSGRP00000002517	LOC107587003	ENSSGRP00000002517	ENSSGRP00000052378	annotation not available	Mitochondrial import inner membrane translocase subunit TIM13.	0.951
ENSSGRP00000002517	LOC107593051	ENSSGRP00000002517	ENSSGRP00000076533	annotation not available	Mitochondrial import inner membrane translocase subunit Tim13-like.	0.951
ENSSGRP00000002517	TIMM8A	ENSSGRP00000002517	ENSSGRP00000001143	annotation not available	Mitochondrial import inner membrane translocase subunit Tim8 A-like.	0.952
ENSSGRP00000061725	ENSSGRP00000087471	ENSSGRP00000061725	ENSSGRP00000087471	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	0.935
ENSSGRP00000061725	ENSSGRP00000087472	ENSSGRP00000061725	ENSSGRP00000087472	annotation not available	annotation not available	0.935
ENSSGRP00000061725	LOC107551571	ENSSGRP00000061725	ENSSGRP00000076693	annotation not available	Mitochondrial import inner membrane translocase subunit TIM10.	0.995
ENSSGRP00000061725	LOC107556822	ENSSGRP00000061725	ENSSGRP00000072772	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10-like.	0.995
ENSSGRP00000061725	LOC107556877	ENSSGRP00000061725	ENSSGRP00000081920	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	0.935
ENSSGRP00000061725	LOC107587003	ENSSGRP00000061725	ENSSGRP00000052378	annotation not available	Mitochondrial import inner membrane translocase subunit TIM13.	0.951
ENSSGRP00000061725	LOC107593051	ENSSGRP00000061725	ENSSGRP00000076533	annotation not available	Mitochondrial import inner membrane translocase subunit Tim13-like.	0.951
ENSSGRP00000061725	TIMM8A	ENSSGRP00000061725	ENSSGRP00000001143	annotation not available	Mitochondrial import inner membrane translocase subunit Tim8 A-like.	0.952
ENSSGRP00000087471	ENSSGRP00000002517	ENSSGRP00000087471	ENSSGRP00000002517	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	annotation not available	0.935
ENSSGRP00000087471	ENSSGRP00000061725	ENSSGRP00000087471	ENSSGRP00000061725	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	annotation not available	0.935
ENSSGRP00000087471	LOC107551571	ENSSGRP00000087471	ENSSGRP00000076693	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	Mitochondrial import inner membrane translocase subunit TIM10.	0.994
ENSSGRP00000087471	LOC107556822	ENSSGRP00000087471	ENSSGRP00000072772	Mitochondrial import inner membrane translocase subunit Tim10 B-like.	Mitochondrial import inner membrane translocase subunit Tim10-like.	0.994