Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107591611Vacuolar protein sorting-associated protein 45-like isoform X1. (571 aa)    
Predicted Functional Partners:
Rbsn
Rabenosyn-5.
    
 0.986
LOC107549571
Rabenosyn-5-like isoform X1.
    
 0.986
LOC107562698
Vacuolar protein sorting-associated protein 18 homolog.
    
 0.924
LOC107602125
Vacuolar protein sorting-associated protein 18 homolog.
    
 0.924
VTI1A
Vesicle transport through interaction with t-SNAREs homolog 1A-like.
   
 
 0.915
LOC107566351
Vesicle transport through interaction with t-SNAREs homolog 1A-like isoform X1.
   
 
 0.915
LOC107596789
Syntaxin-16-like isoform X1.
    
 
 0.912
LOC107554194
Syntaxin-16-like.
    
 
 0.912
RAB5A
RAB5A, member RAS oncogene family.
    
 0.888
LOC107598172
Ras-related protein Rab-5B-like.
    
 0.888
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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