Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001200Protein FAM98A-like. (503 aa)    
Predicted Functional Partners:
rtcb
TRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase).
    
 0.987
ENSSGRP00000049118
Protein FAM98B-like.
  
 
0.960
ENSSGRP00000055600
ATP-dependent RNA helicase DDX1-like.
   
 
 0.951
ddx1
ATP-dependent RNA helicase DDX1.
   
 
 0.951
rtraf
UPF0568 protein C14orf166 homolog.
    
 
 0.910
LOC107564979
UPF0568 protein C14orf166 homolog.
    
 
 0.910
LOC107567119
Ataxin-2-like protein isoform X1.
    
 
 0.888
Atxn2l
Ataxin-2-like protein isoform X1.
    
 
 0.888
LOC107587528
Nuclear fragile X mental retardation-interacting protein 2-like.
    
 
 0.881
ENSSGRP00000059311
Nuclear fragile X mental retardation-interacting protein 2-like.
    
 
 0.881
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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