STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001200Protein FAM98A-like. (503 aa)    
Predicted Functional Partners:
ENSSGRP00000055600
ATP-dependent RNA helicase DDX1-like.
   
 
 0.950
ddx1
ATP-dependent RNA helicase DDX1.
   
 
 0.950
rtraf
UPF0568 protein C14orf166 homolog.
    
 
 0.916
LOC107564979
UPF0568 protein C14orf166 homolog.
    
 
 0.916
LOC107587528
Nuclear fragile X mental retardation-interacting protein 2-like.
    
 
 0.714
ENSSGRP00000059311
Nuclear fragile X mental retardation-interacting protein 2-like.
    
 
 0.714
ENSSGRP00000086811
Ataxin 2.
    
 
 0.660
LOC107552590
Ataxin-2-like.
    
 
 0.660
rtcb
TRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase).
    
 
 0.641
LOC107551065
Ashwin-like.
      
 0.619
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.