Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001226U6 snRNA-associated Sm-like protein LSm3. (104 aa)    
Predicted Functional Partners:
LOC107552258-2
U6 snRNA-associated Sm-like protein LSm2.
   
 0.998
ENSSGRP00000070187
annotation not available
   
 0.996
Lsm5
U6 snRNA-associated Sm-like protein LSm5.
   
 0.996
LOC107552484
U6 snRNA-associated Sm-like protein LSm6.
   
 0.995
LOC107592220
U6 snRNA-associated Sm-like protein LSm8.
   
 0.995
LOC107580766
U6 snRNA-associated Sm-like protein LSm8 isoform X1.
   
 0.995
ENSSGRP00000018739
U6 snRNA-associated Sm-like protein LSm4.
   
 0.993
LOC107586931
U6 snRNA-associated Sm-like protein LSm7.
   
 0.993
LOC107552484-2
U6 snRNA-associated Sm-like protein LSm6.
   
 0.993
ENSSGRP00000077204
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.993
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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