STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001250Electrogenic sodium bicarbonate cotransporter 4-like. (1030 aa)    
Predicted Functional Partners:
ENSSGRP00000099045
Tetratricopeptide repeat domain 6.
   
    0.505
LOC107597116
Axonemal dynein light intermediate polypeptide 1-like.
   
  
 0.493
LOC107587750
Axonemal dynein light intermediate polypeptide 1-like.
   
  
 0.493
LOC107554631
Rho GTPase-activating protein 1-like.
     
 0.456
ENSSGRP00000103313
Rho GTPase-activating protein 1-like isoform X1.
     
 0.456
LOC107558117
Rho-related GTP-binding protein RhoF-like.
    
  0.414
LOC107577248
Rho-related GTP-binding protein RhoF-like.
    
  0.414
Mtr
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 
  0.413
LOC107595290
Cytochrome b5 domain-containing protein 1.
   
  
 0.413
ENSSGRP00000111395
annotation not available
   
  
 0.413
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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