LOC107571720 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107571720

Ribosyldihydronicotinamide dehydrogenase [quinone]-like isoform X1. (272 aa)

Predicted Functional Partners:

LOC107562573

0.864

LOC107598672

0.864

ENSSGRP00000079460

0.864

ENSSGRP00000090655

0.864

LOC107599945

0.770

LOC107592291

0.770

ENSSGRP00000013467

0.766

Nqo2

0.766

ENSSGRP00000005865

0.650

ENSSGRP00000011991

0.650

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005865	ENSSGRP00000013467	ENSSGRP00000005865	ENSSGRP00000013467	Vitamin K epoxide reductase complex, subunit 1-like 1.	NAD(P)H dehydrogenase, quinone 1.	0.807
ENSSGRP00000005865	ENSSGRP00000079460	ENSSGRP00000005865	ENSSGRP00000079460	Vitamin K epoxide reductase complex, subunit 1-like 1.	Vitamin K-dependent gamma-carboxylase-like.	0.890
ENSSGRP00000005865	ENSSGRP00000090655	ENSSGRP00000005865	ENSSGRP00000090655	Vitamin K epoxide reductase complex, subunit 1-like 1.	Vitamin K epoxide reductase complex, subunit 1.	0.819
ENSSGRP00000005865	LOC107562573	ENSSGRP00000005865	ENSSGRP00000049875	Vitamin K epoxide reductase complex, subunit 1-like 1.	Vitamin K-dependent gamma-carboxylase-like isoform X1.	0.890
ENSSGRP00000005865	LOC107571720	ENSSGRP00000005865	ENSSGRP00000001262	Vitamin K epoxide reductase complex, subunit 1-like 1.	Ribosyldihydronicotinamide dehydrogenase [quinone]-like isoform X1.	0.650
ENSSGRP00000005865	LOC107598672	ENSSGRP00000005865	ENSSGRP00000064405	Vitamin K epoxide reductase complex, subunit 1-like 1.	Vitamin K epoxide reductase complex subunit 1-like.	0.776
ENSSGRP00000005865	Nqo2	ENSSGRP00000005865	ENSSGRP00000032715	Vitamin K epoxide reductase complex, subunit 1-like 1.	Ribosyldihydronicotinamide dehydrogenase [quinone].	0.807
ENSSGRP00000011991	ENSSGRP00000013467	ENSSGRP00000011991	ENSSGRP00000013467	annotation not available	NAD(P)H dehydrogenase, quinone 1.	0.807
ENSSGRP00000011991	ENSSGRP00000079460	ENSSGRP00000011991	ENSSGRP00000079460	annotation not available	Vitamin K-dependent gamma-carboxylase-like.	0.890
ENSSGRP00000011991	ENSSGRP00000090655	ENSSGRP00000011991	ENSSGRP00000090655	annotation not available	Vitamin K epoxide reductase complex, subunit 1.	0.824
ENSSGRP00000011991	LOC107562573	ENSSGRP00000011991	ENSSGRP00000049875	annotation not available	Vitamin K-dependent gamma-carboxylase-like isoform X1.	0.890
ENSSGRP00000011991	LOC107571720	ENSSGRP00000011991	ENSSGRP00000001262	annotation not available	Ribosyldihydronicotinamide dehydrogenase [quinone]-like isoform X1.	0.650
ENSSGRP00000011991	LOC107598672	ENSSGRP00000011991	ENSSGRP00000064405	annotation not available	Vitamin K epoxide reductase complex subunit 1-like.	0.776
ENSSGRP00000011991	Nqo2	ENSSGRP00000011991	ENSSGRP00000032715	annotation not available	Ribosyldihydronicotinamide dehydrogenase [quinone].	0.807
ENSSGRP00000013467	ENSSGRP00000005865	ENSSGRP00000013467	ENSSGRP00000005865	NAD(P)H dehydrogenase, quinone 1.	Vitamin K epoxide reductase complex, subunit 1-like 1.	0.807
ENSSGRP00000013467	ENSSGRP00000011991	ENSSGRP00000013467	ENSSGRP00000011991	NAD(P)H dehydrogenase, quinone 1.	annotation not available	0.807
ENSSGRP00000013467	ENSSGRP00000079460	ENSSGRP00000013467	ENSSGRP00000079460	NAD(P)H dehydrogenase, quinone 1.	Vitamin K-dependent gamma-carboxylase-like.	0.912
ENSSGRP00000013467	ENSSGRP00000090655	ENSSGRP00000013467	ENSSGRP00000090655	NAD(P)H dehydrogenase, quinone 1.	Vitamin K epoxide reductase complex, subunit 1.	0.896
ENSSGRP00000013467	LOC107562573	ENSSGRP00000013467	ENSSGRP00000049875	NAD(P)H dehydrogenase, quinone 1.	Vitamin K-dependent gamma-carboxylase-like isoform X1.	0.912
ENSSGRP00000013467	LOC107571720	ENSSGRP00000013467	ENSSGRP00000001262	NAD(P)H dehydrogenase, quinone 1.	Ribosyldihydronicotinamide dehydrogenase [quinone]-like isoform X1.	0.766