STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase. (228 aa)    
Predicted Functional Partners:
LOC107586524
6-phosphogluconate dehydrogenase, decarboxylating-like.
   
 0.996
LOC107578334
Transketolase-like isoform X1.
  
 0.995
LOC107582382
Transketolase-like.
  
 0.995
LOC107568840
Transketolase-like.
  
 0.995
LOC107568642
Ribose-5-phosphate isomerase-like.
  
 0.976
ENSSGRP00000084178
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
  
 0.976
Xylb
Xylulose kinase.
  
 0.971
LOC107554504
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like.
    
 0.963
LOC107560150
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like.
    
 0.963
rbm45
RNA-binding protein 45.
   
 0.962
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.