STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107584214Ribosomal L1 domain-containing protein 1-like. (360 aa)    
Predicted Functional Partners:
ENSSGRP00000007414
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.999
LOC107555919
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.999
brix1
Biogenesis of ribosomes BRX1.
   
 
 0.999
Ftsj3
AdoMet-dependent rRNA methyltransferase SPB1.
   
 
 0.999
ENSSGRP00000041844
Protein AATF-like isoform X1.
   
 
 0.999
rpf2
Ribosome production factor 2 homolog.
   
 
 0.999
ENSSGRP00000089012
Ribosomal RNA processing 1.
   
 
 0.999
ENSSGRP00000109659
EBNA1 binding protein 2.
   
 
 0.999
LOC107555922
ATP-dependent RNA helicase DDX18/HAS1.
   
 
 0.998
LOC107596072
ATP-dependent RNA helicase DDX18-like.
   
 
 0.998
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.