Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107584214Ribosomal L1 domain-containing protein 1-like. (360 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.988
ENSSGRP00000109659
EBNA1 binding protein 2.
   
 
 0.988
brix1
Biogenesis of ribosomes BRX1.
   
 
 0.987
ENSSGRP00000089012
Ribosomal RNA processing 1.
   
 
 0.986
ENSSGRP00000007414
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.984
LOC107555919
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.984
Ftsj3
AdoMet-dependent rRNA methyltransferase SPB1.
   
 
 0.984
ENSSGRP00000075557
CCAAT enhancer binding protein zeta.
   
 
 0.984
ENSSGRP00000041844
Protein AATF-like isoform X1.
   
 
 0.980
noc3l
Nucleolar complex protein 3 homolog.
   
 
 0.980
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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