Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001301Excision repair cross-complementation group 4. (793 aa)    
Predicted Functional Partners:
ercc1
DNA excision repair protein ERCC-1.
   
 0.996
ENSSGRP00000105732
DNA excision repair protein ERCC-1-like.
   
 0.996
ENSSGRP00000060780
TFIIH basal transcription factor complex helicase XPB subunit-like.
  
 0.985
ENSSGRP00000107977
LOW QUALITY PROTEIN: TFIIH basal transcription factor complex helicase XPB subunit-like.
  
 0.985
ENSSGRP00000000773
LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.
    
 0.984
ENSSGRP00000005593
annotation not available
    
 0.984
ENSSGRP00000095199
Uncharacterized protein LOC107557956.
    
 0.984
fancf
Fanconi anemia group F protein.
    
 0.978
ENSSGRP00000051038
FA complementation group B.
   
 0.976
ENSSGRP00000073714
annotation not available
  
 0.976
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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