STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107564001Transcription elongation factor B polypeptide 2-like. (119 aa)    
Predicted Functional Partners:
ENSSGRP00000005442
RING-box protein 1.
   
 0.982
rbx1
E3 ubiquitin-protein ligase RBX1.
   
 0.982
ENSSGRP00000020633
Cullin 2.
    
 0.981
LOC107553259
UBX domain-containing protein 7-like.
    
 0.981
ENSSGRP00000079993
Cullin 2.
    
 0.981
LOC107563300
UBX domain-containing protein 7-like isoform X1.
    
 0.981
LOC107560250
Transcription elongation factor B polypeptide 1-like.
   
 0.973
LOC107550711
Transcription elongation factor B polypeptide 1.
   
 0.973
LOC107550711-2
Transcription elongation factor B polypeptide 1.
   
 0.973
LOC107569299
Von Hippel-Lindau disease tumor suppressor-like.
    
 0.969
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.