ENSSGRP00000001421 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSGRP00000001421

Opsin 1 (cone pigments), short-wave-sensitive 1. (238 aa)

Predicted Functional Partners:

ENSSGRP00000069064

0.904

LOC107550493

0.863

LOC107591823

0.863

ENSSGRP00000074480

0.744

Gnat1

0.744

LOC107585363

0.725

LOC107588645

0.725

ENSSGRP00000002257

0.715

ENSSGRP00000013586

0.715

ENSSGRP00000048396

0.715

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001421	ENSSGRP00000002257	ENSSGRP00000001421	ENSSGRP00000002257	Opsin 1 (cone pigments), short-wave-sensitive 1.	annotation not available	0.715
ENSSGRP00000001421	ENSSGRP00000013586	ENSSGRP00000001421	ENSSGRP00000013586	Opsin 1 (cone pigments), short-wave-sensitive 1.	Rhodopsin.	0.715
ENSSGRP00000001421	ENSSGRP00000048396	ENSSGRP00000001421	ENSSGRP00000048396	Opsin 1 (cone pigments), short-wave-sensitive 1.	Rhodopsin, like.	0.715
ENSSGRP00000001421	ENSSGRP00000069064	ENSSGRP00000001421	ENSSGRP00000069064	Opsin 1 (cone pigments), short-wave-sensitive 1.	Guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1.	0.904
ENSSGRP00000001421	ENSSGRP00000074480	ENSSGRP00000001421	ENSSGRP00000074480	Opsin 1 (cone pigments), short-wave-sensitive 1.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.744
ENSSGRP00000001421	Gnat1	ENSSGRP00000001421	ENSSGRP00000109740	Opsin 1 (cone pigments), short-wave-sensitive 1.	Guanine nucleotide-binding protein G(t) subunit alpha 1/2.	0.744
ENSSGRP00000001421	LOC107550493	ENSSGRP00000001421	ENSSGRP00000010691	Opsin 1 (cone pigments), short-wave-sensitive 1.	Guanine nucleotide-binding protein G(t) subunit alpha-2-like.	0.863
ENSSGRP00000001421	LOC107585363	ENSSGRP00000001421	ENSSGRP00000050329	Opsin 1 (cone pigments), short-wave-sensitive 1.	RPE-retinal G protein-coupled receptor-like.	0.725
ENSSGRP00000001421	LOC107588645	ENSSGRP00000001421	ENSSGRP00000073438	Opsin 1 (cone pigments), short-wave-sensitive 1.	RPE-retinal G protein-coupled receptor-like.	0.725
ENSSGRP00000001421	LOC107591823	ENSSGRP00000001421	ENSSGRP00000061656	Opsin 1 (cone pigments), short-wave-sensitive 1.	Guanine nucleotide-binding protein G(t) subunit alpha-2-like.	0.863
ENSSGRP00000002257	ENSSGRP00000001421	ENSSGRP00000002257	ENSSGRP00000001421	annotation not available	Opsin 1 (cone pigments), short-wave-sensitive 1.	0.715
ENSSGRP00000002257	ENSSGRP00000069064	ENSSGRP00000002257	ENSSGRP00000069064	annotation not available	Guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1.	0.954
ENSSGRP00000002257	ENSSGRP00000074480	ENSSGRP00000002257	ENSSGRP00000074480	annotation not available	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.977
ENSSGRP00000002257	Gnat1	ENSSGRP00000002257	ENSSGRP00000109740	annotation not available	Guanine nucleotide-binding protein G(t) subunit alpha 1/2.	0.977
ENSSGRP00000002257	LOC107550493	ENSSGRP00000002257	ENSSGRP00000010691	annotation not available	Guanine nucleotide-binding protein G(t) subunit alpha-2-like.	0.982
ENSSGRP00000002257	LOC107585363	ENSSGRP00000002257	ENSSGRP00000050329	annotation not available	RPE-retinal G protein-coupled receptor-like.	0.772
ENSSGRP00000002257	LOC107588645	ENSSGRP00000002257	ENSSGRP00000073438	annotation not available	RPE-retinal G protein-coupled receptor-like.	0.772
ENSSGRP00000002257	LOC107591823	ENSSGRP00000002257	ENSSGRP00000061656	annotation not available	Guanine nucleotide-binding protein G(t) subunit alpha-2-like.	0.982
ENSSGRP00000013586	ENSSGRP00000001421	ENSSGRP00000013586	ENSSGRP00000001421	Rhodopsin.	Opsin 1 (cone pigments), short-wave-sensitive 1.	0.715
ENSSGRP00000013586	ENSSGRP00000069064	ENSSGRP00000013586	ENSSGRP00000069064	Rhodopsin.	Guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1.	0.954