STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Frg1Protein FRG1. (256 aa)    
Predicted Functional Partners:
ENSSGRP00000054889
CWC22 spliceosome associated protein homolog.
   
   0.964
ENSSGRP00000074139
Pre-mRNA-splicing factor CWC22 homolog.
   
   0.964
LOC107548576
Pre-mRNA-processing-splicing factor 8-like isoform X1.
    
 
 0.828
ENSSGRP00000080948
pre-mRNA processing factor 8.
    
 
 0.828
prpf19
Pre-mRNA-processing factor 19.
    
   0.785
ENSSGRP00000112991
Pre-mRNA-processing factor 19-like.
    
   0.785
LOC107592276
Protein CWC15 homolog.
   
 
 0.782
cir1
Corepressor interacting with RBPJ 1.
   
 
 0.781
cdc40
Cell division cycle 40.
    
   0.762
ENSSGRP00000013227
Cell division cycle 40 homolog (S. cerevisiae).
    
   0.762
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.