STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001482ATPase family AAA domain containing 1a. (392 aa)    
Predicted Functional Partners:
LOC107553259
UBX domain-containing protein 7-like.
   
 0.975
LOC107563300
UBX domain-containing protein 7-like isoform X1.
   
 0.975
pex13
Peroxisome biogenesis factor 13.
    
 0.820
LOC107552148
Ubiquitin fusion degradation protein 1 homolog.
   
 0.794
LOC107553030
Ubiquitin fusion degradation protein 1 homolog.
   
 0.794
LOC107591335
Peroxisomal biogenesis factor 19-like.
    
 0.759
LOC107557446
Peroxisomal biogenesis factor 19-like.
    
 0.759
ENSSGRP00000002333
Peroxisomal biogenesis factor 12.
    
 0.756
LOC107587685
Peroxisome assembly protein 12-like.
    
 0.756
LOC107586824
Charged multivesicular body protein 3.
   
 0.742
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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