rcvrn protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rcvrn

Recoverin. (203 aa)

Predicted Functional Partners:

ENSSGRP00000007488

0.977

GRK1

0.953

grk1

0.953

LOC107553262

0.944

LOC107563306

0.944

ENSSGRP00000036209

0.868

ENSSGRP00000079424

0.868

ENSSGRP00000002257

0.858

RHO

0.858

ENSSGRP00000013586

0.838

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002257	ENSSGRP00000007488	ENSSGRP00000002257	ENSSGRP00000007488	annotation not available	Rhodopsin kinase-like.	0.970
ENSSGRP00000002257	ENSSGRP00000036209	ENSSGRP00000002257	ENSSGRP00000036209	annotation not available	LOW QUALITY PROTEIN: G protein-coupled receptor kinase 7B-like.	0.876
ENSSGRP00000002257	ENSSGRP00000079424	ENSSGRP00000002257	ENSSGRP00000079424	annotation not available	G protein-coupled receptor kinase 7b.	0.876
ENSSGRP00000002257	GRK1	ENSSGRP00000002257	ENSSGRP00000007845	annotation not available	G protein-coupled receptor kinase 1.	0.940
ENSSGRP00000002257	LOC107553262	ENSSGRP00000002257	ENSSGRP00000024122	annotation not available	G-protein-coupled receptor kinase 7A-like.	0.927
ENSSGRP00000002257	LOC107563306	ENSSGRP00000002257	ENSSGRP00000082917	annotation not available	G-protein-coupled receptor kinase 7A.	0.927
ENSSGRP00000002257	grk1	ENSSGRP00000002257	ENSSGRP00000048780	annotation not available	Rhodopsin kinase.	0.940
ENSSGRP00000002257	rcvrn	ENSSGRP00000002257	ENSSGRP00000001520	annotation not available	Recoverin.	0.858
ENSSGRP00000007488	ENSSGRP00000002257	ENSSGRP00000007488	ENSSGRP00000002257	Rhodopsin kinase-like.	annotation not available	0.970
ENSSGRP00000007488	ENSSGRP00000013586	ENSSGRP00000007488	ENSSGRP00000013586	Rhodopsin kinase-like.	Rhodopsin.	0.978
ENSSGRP00000007488	ENSSGRP00000036209	ENSSGRP00000007488	ENSSGRP00000036209	Rhodopsin kinase-like.	LOW QUALITY PROTEIN: G protein-coupled receptor kinase 7B-like.	0.883
ENSSGRP00000007488	ENSSGRP00000079424	ENSSGRP00000007488	ENSSGRP00000079424	Rhodopsin kinase-like.	G protein-coupled receptor kinase 7b.	0.883
ENSSGRP00000007488	GRK1	ENSSGRP00000007488	ENSSGRP00000007845	Rhodopsin kinase-like.	G protein-coupled receptor kinase 1.	0.904
ENSSGRP00000007488	LOC107553262	ENSSGRP00000007488	ENSSGRP00000024122	Rhodopsin kinase-like.	G-protein-coupled receptor kinase 7A-like.	0.927
ENSSGRP00000007488	LOC107563306	ENSSGRP00000007488	ENSSGRP00000082917	Rhodopsin kinase-like.	G-protein-coupled receptor kinase 7A.	0.927
ENSSGRP00000007488	RHO	ENSSGRP00000007488	ENSSGRP00000099207	Rhodopsin kinase-like.	Rhodopsin.	0.970
ENSSGRP00000007488	grk1	ENSSGRP00000007488	ENSSGRP00000048780	Rhodopsin kinase-like.	Rhodopsin kinase.	0.904
ENSSGRP00000007488	rcvrn	ENSSGRP00000007488	ENSSGRP00000001520	Rhodopsin kinase-like.	Recoverin.	0.977
ENSSGRP00000013586	ENSSGRP00000007488	ENSSGRP00000013586	ENSSGRP00000007488	Rhodopsin.	Rhodopsin kinase-like.	0.978
ENSSGRP00000013586	ENSSGRP00000036209	ENSSGRP00000013586	ENSSGRP00000036209	Rhodopsin.	LOW QUALITY PROTEIN: G protein-coupled receptor kinase 7B-like.	0.907