STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107593326Ubiquitin-conjugating enzyme E2 R2-like. (241 aa)    
Predicted Functional Partners:
LOC107572061
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.973
ENSSGRP00000083272
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.911
ENSSGRP00000106616
annotation not available
   
 0.911
ENSSGRP00000030473
Polyubiquitin-C isoform X1.
   
 0.906
ENSSGRP00000089091
Polyubiquitin-B-like isoform X1.
   
 0.906
skp1
S-phase kinase-associated protein 1 isoform X1.
    
 0.901
Trip12
E3 ubiquitin-protein ligase TRIP12.
   
 0.895
ENSSGRP00000084766
E3 ubiquitin-protein ligase TRIP12-like.
   
 0.895
ENSSGRP00000005442
RING-box protein 1.
   
 0.892
rbx1
E3 ubiquitin-protein ligase RBX1.
   
 0.892
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.