STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107556481[histone H3]-lysine9 N-trimethyltransferase PRDM2. (1491 aa)    
Predicted Functional Partners:
LOC107602502
Calmodulin-lysine N-methyltransferase-like isoform X1.
     
 0.701
ENSSGRP00000059199
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like.
     
  0.650
plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
     
  0.650
Lcp2
Lymphocyte cytosolic protein 2.
     
 0.519
ENSSGRP00000000384
Reversion-inducing-cysteine-rich protein with kazal motifs.
      
 0.480
Brca2
Breast cancer type 2 susceptibility protein isoform X1.
      
 0.480
Reck
Reversion-inducing cysteine-rich protein with Kazal motifs.
      
 0.480
ENSSGRP00000071274
Breast cancer type 2 susceptibility protein homolog.
      
 0.480
LOC107593213
Membrane transport protein XK-like.
  
 0.477
ENSSGRP00000032236
Histone acetyltransferase p300-like.
   
 
 0.465
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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