Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001585Retinoic acid receptor alpha-A isoform X1. (454 aa)    
Predicted Functional Partners:
LOC107573462
Retinoic acid receptor RXR-alpha-A isoform X1.
   
 0.887
ENSSGRP00000098985
Retinoic acid receptor RXR-alpha-A-like isoform X1.
   
 0.887
med1
Mediator of RNA polymerase II transcription subunit 1 isoform X1.
    
  0.861
ENSSGRP00000028575
Retinoic acid receptor RXR-beta-A-like.
   
 0.744
ENSSGRP00000053620
Retinoid x receptor, beta a.
   
 0.744
ENSSGRP00000088553
Nuclear receptor corepressor 1-like.
    
 0.741
ENSSGRP00000107292
Nuclear receptor corepressor 1-like.
    
 0.741
ENSSGRP00000053042
Retinoic acid receptor RXR-alpha-B-like.
   
 0.711
ENSSGRP00000109190
Retinoic acid receptor RXR-alpha-B isoform X1.
   
 0.711
LOC107554898
Transcription factor PU.1-like isoform X1.
    
 0.693
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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