Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107591617Cartilage-associated protein-like isoform X1. (396 aa)    
Predicted Functional Partners:
PPIB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
   
 0.959
LOC107560023
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
   
 0.959
PPIC
Peptidyl-prolyl cis-trans isomerase C-like isoform X1.
   
 0.892
P3h1
Procollagen-proline 3-dioxygenase 1.
   
0.866
ENSSGRP00000078534
Procollagen-proline 3-dioxygenase 1.
   
0.866
p3h3
Procollagen-proline 3-dioxygenase 3.
   
  0.839
ENSSGRP00000037467
annotation not available
   
  0.839
LOC107564922
Procollagen-proline 3-dioxygenase 2.
   
  0.839
ENSSGRP00000073923
Procollagen-proline 3-dioxygenase 2.
   
  0.839
serpinf1
Pigment epithelium-derived factor.
     
 0.759
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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