Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trmt13TRNA:m(4)X modification enzyme TRM13 homolog. (461 aa)    
Predicted Functional Partners:
mettl1
TRNA (guanine-N(7)-)-methyltransferase.
   
  
 0.713
trmt44
Probable tRNA (uracil-O(2)-)-methyltransferase.
   
  
 0.709
ENSSGRP00000013129
DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).
   
  
 0.683
dimt1
18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase.
   
  
 0.683
tpgs2
Tubulin polyglutamylase complex subunit 2.
      
 0.678
LOC107589545
TRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like.
   
  
 0.669
LOC107582491
TRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like.
   
  
 0.669
ENSSGRP00000015960
Si:ch211-59d15.9.
      
 0.655
LOC107584588
RNA exonuclease 4-like isoform X1.
   
  
 0.640
rexo4
RNA exonuclease 4.
   
  
 0.640
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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