STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt13TRNA:m(4)X modification enzyme TRM13 homolog. (461 aa)    
Predicted Functional Partners:
Aasdh
Acyl-CoA synthetase family member 4 isoform X1.
   
    0.745
LOC107600515
TRNA (guanine(10)-N2)-methyltransferase homolog.
   
  
 0.741
LOC107567767
TRNA (guanine(10)-N2)-methyltransferase homolog.
   
  
 0.741
mettl1
TRNA (guanine-N(7)-)-methyltransferase.
   
  
 0.734
trmt44
Probable tRNA (uracil-O(2)-)-methyltransferase.
   
  
 0.696
LOC107564676
TRNA guanosine-2'-O-methyltransferase.
   
  
 0.671
lyrm9
LYR motif-containing protein 9.
   
  
 0.668
LOC107591736
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase isoform X1.
   
  
 0.639
LOC107589293
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase.
   
  
 0.639
tpgs2
Tubulin polyglutamylase complex subunit 2.
      
 0.638
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.