STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001700Leucine-rich repeat-containing protein 39-like. (336 aa)    
Predicted Functional Partners:
ENSSGRP00000001710
RNA 3'-terminal phosphate cyclase (ATP).
    
 
 0.615
rtca
RNA 3'-terminal phosphate cyclase (ATP).
    
 
 0.615
ENSSGRP00000048079
Alkaline ceramidase 3-like.
     
 0.612
Znf511
Zinc finger protein 511.
      
 0.608
ENSSGRP00000012595
Protein FAM179B-like isoform X1.
      
 0.593
ENSSGRP00000032430
annotation not available
      
 0.593
ENSSGRP00000007765
annotation not available
    
 0.590
ENSSGRP00000104192
Protein phosphatase 1, regulatory subunit 42.
    
 0.590
trmt13
TRNA:m(4)X modification enzyme TRM13 homolog.
      
 0.582
ENSSGRP00000073486
annotation not available
      
 0.582
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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