STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001710RNA 3'-terminal phosphate cyclase (ATP). (334 aa)    
Predicted Functional Partners:
utp18
U3 small nucleolar RNA-associated protein 18 homolog.
   
 0.994
ENSSGRP00000013069
UTP3 small subunit processome component.
   
 
 0.984
tbl3
U3 small nucleolar RNA-associated protein 13.
   
 
 0.983
imp3
U3 small nucleolar ribonucleoprotein protein IMP3.
   
 0.983
LOC107553989
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.977
LOC107583899
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.977
ENSSGRP00000034240
BMS1 ribosome biogenesis factor.
   
 0.974
Bms1
Ribosome biogenesis protein BMS1 homolog.
   
 0.974
ENSSGRP00000061315
LOW QUALITY PROTEIN: periodic tryptophan protein 2 homolog.
   
 
 0.972
LOC107588835
Periodic tryptophan protein 2 homolog.
   
 
 0.972
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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