LOC107553435 protein (Sinocyclocheilus grahami)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC107553435

TBC1 domain family member 12-like. (823 aa)

Predicted Functional Partners:

ENSSGRP00000016845

0.813

ENSSGRP00000110457

0.813

ENSSGRP00000025599

0.773

trappc13

0.773

LOC107559294

0.755

LOC107587085

0.755

trappc12

0.743

LOC107589762

0.743

LOC107600366

0.725

LOC107561464

0.725

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000016845	ENSSGRP00000025599	ENSSGRP00000016845	ENSSGRP00000025599	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 13-like.	0.976
ENSSGRP00000016845	ENSSGRP00000110457	ENSSGRP00000016845	ENSSGRP00000110457	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 8-like.	0.543
ENSSGRP00000016845	LOC107553435	ENSSGRP00000016845	ENSSGRP00000001731	Trafficking protein particle complex subunit 8-like isoform X1.	TBC1 domain family member 12-like.	0.813
ENSSGRP00000016845	LOC107559294	ENSSGRP00000016845	ENSSGRP00000044597	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 11-like.	0.991
ENSSGRP00000016845	LOC107561464	ENSSGRP00000016845	ENSSGRP00000034058	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 2-like protein.	0.989
ENSSGRP00000016845	LOC107587085	ENSSGRP00000016845	ENSSGRP00000083778	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 11.	0.991
ENSSGRP00000016845	LOC107589762	ENSSGRP00000016845	ENSSGRP00000086193	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 12-like.	0.996
ENSSGRP00000016845	LOC107600366	ENSSGRP00000016845	ENSSGRP00000011377	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 2-like protein.	0.989
ENSSGRP00000016845	trappc12	ENSSGRP00000016845	ENSSGRP00000040569	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 12.	0.996
ENSSGRP00000016845	trappc13	ENSSGRP00000016845	ENSSGRP00000096556	Trafficking protein particle complex subunit 8-like isoform X1.	Trafficking protein particle complex subunit 13 isoform X1.	0.976
ENSSGRP00000025599	ENSSGRP00000016845	ENSSGRP00000025599	ENSSGRP00000016845	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 8-like isoform X1.	0.976
ENSSGRP00000025599	ENSSGRP00000110457	ENSSGRP00000025599	ENSSGRP00000110457	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 8-like.	0.976
ENSSGRP00000025599	LOC107553435	ENSSGRP00000025599	ENSSGRP00000001731	Trafficking protein particle complex subunit 13-like.	TBC1 domain family member 12-like.	0.773
ENSSGRP00000025599	LOC107559294	ENSSGRP00000025599	ENSSGRP00000044597	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 11-like.	0.977
ENSSGRP00000025599	LOC107561464	ENSSGRP00000025599	ENSSGRP00000034058	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 2-like protein.	0.985
ENSSGRP00000025599	LOC107587085	ENSSGRP00000025599	ENSSGRP00000083778	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 11.	0.977
ENSSGRP00000025599	LOC107589762	ENSSGRP00000025599	ENSSGRP00000086193	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 12-like.	0.995
ENSSGRP00000025599	LOC107600366	ENSSGRP00000025599	ENSSGRP00000011377	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 2-like protein.	0.985
ENSSGRP00000025599	trappc12	ENSSGRP00000025599	ENSSGRP00000040569	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 12.	0.995
ENSSGRP00000025599	trappc13	ENSSGRP00000025599	ENSSGRP00000096556	Trafficking protein particle complex subunit 13-like.	Trafficking protein particle complex subunit 13 isoform X1.	0.544