Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001771Protein DGCR14-like. (290 aa)    
Predicted Functional Partners:
prpf19
Pre-mRNA-processing factor 19.
    
 
 0.905
ENSSGRP00000112991
Pre-mRNA-processing factor 19-like.
    
 
 0.905
LOC107559132
Crooked neck-like protein 1.
    
 
 0.898
ENSSGRP00000054055
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.898
LOC107601502
pre-mRNA-splicing factor SLU7-like.
    
 
 0.879
ENSSGRP00000041114
XPA binding protein 2.
    
 
 0.877
xab2
Pre-mRNA-splicing factor SYF1 isoform X1.
    
 
 0.877
fam32a
Protein FAM32A.
    
 
 0.869
ENSSGRP00000065776
annotation not available
    
 
 0.865
gpatch1
G patch domain-containing protein 1.
    
 
 0.865
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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