STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001771Protein DGCR14-like. (290 aa)    
Predicted Functional Partners:
prpf19
Pre-mRNA-processing factor 19.
    
 
 0.676
ENSSGRP00000112991
Pre-mRNA-processing factor 19-like.
    
 
 0.676
ENSSGRP00000041114
XPA binding protein 2.
   
 
 0.641
xab2
Pre-mRNA-splicing factor SYF1 isoform X1.
   
 
 0.641
ENSSGRP00000037470
annotation not available
      
 0.628
LOC107601502
pre-mRNA-splicing factor SLU7-like.
      
 0.627
LOC107587602
Protein RTF2 homolog.
      
 0.595
ENSSGRP00000051307
Replication termination factor 2.
      
 0.595
LOC107558114
Integral membrane protein DGCR2/IDD-like isoform X1.
      
 0.592
FRA10AC1
Protein FRA10AC1 homolog.
    
 
 0.592
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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