Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSSGRP00000001839Serine/threonine-protein kinase SMG1-like isoform X1. (3624 aa)    
Predicted Functional Partners:
ENSSGRP00000007313
Regulator of nonsense transcripts 1-like.
    
 0.992
upf1
Regulator of nonsense transcripts 1 isoform X1.
    
 0.992
LOC107570844
Protein SMG9-like.
    
 0.990
LOC107577889
Protein SMG8-like.
   
 0.990
LOC107589184
Protein SMG8-like.
   
 0.990
LOC107595308
Protein SMG9.
    
 0.990
LOC107563557
Protein SMG7-like isoform X1.
   
 0.983
ENSSGRP00000069308
Protein SMG7-like isoform X1.
   
 0.983
eif4a3
Eukaryotic initiation factor 4A-III.
   
 
 0.970
LOC107553319
Regulatory-associated protein of mTOR-like isoform X1.
   
 0.960
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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