Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001856annotation not available (246 aa)    
Predicted Functional Partners:
ENSSGRP00000052714
annotation not available
    
 
 0.550
msh3
DNA mismatch repair protein Msh3 isoform X1.
      
 0.529
ENSSGRP00000040788
annotation not available
      
 0.529
ENSSGRP00000065842
annotation not available
      
 0.516
SH3TC1
SH3 domain and tetratricopeptide repeats 1.
      
 0.516
LOC107569544
Neuronal pentraxin-1-like.
      
 0.497
LOC107588503
Transcription initiation factor TFIID subunit 12-like.
    
 0.461
LOC107566933
Transcription initiation factor TFIID subunit 12-like.
    
 0.461
ENSSGRP00000042268
Neurobeachin-like 1.
      
 0.421
Nbeal1
Neurobeachin-like protein 1 isoform X1.
      
 0.421
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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