STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107564021Coiled-coil domain-containing protein 43-like. (213 aa)    
Predicted Functional Partners:
ccdc34
Coiled-coil domain-containing protein 34.
      
 0.563
LOC107596601
WASH complex subunit CCDC53-like.
      
 0.520
LOC107590199
WASH complex subunit CCDC53.
      
 0.520
ENSSGRP00000085295
Golgi SNAP receptor complex member 2-like.
      
 0.517
ENSSGRP00000100990
Golgi SNAP receptor complex member 2.
      
 0.517
ENSSGRP00000041033
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
    0.446
leo1
RNA polymerase-associated protein LEO1.
   
    0.446
ENSSGRP00000095476
WASH complex subunit strumpellin-like.
      
 0.422
washc5
WASH complex subunit strumpellin.
      
 0.422
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.