Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001906Niban-like protein 1. (783 aa)    
Predicted Functional Partners:
LOC107597795
Histone H2A deubiquitinase MYSM1-like.
   
 0.856
ENSSGRP00000110057
Myb-like, SWIRM and MPN domains 1.
   
 0.856
ENSSGRP00000034836
RING finger protein 223-like.
    
 0.804
ENSSGRP00000012934
Intersectin 2a.
    
 0.713
ENSSGRP00000074134
Intersectin-2-like.
    
 0.713
ENSSGRP00000084141
Intersectin 2b.
    
 0.713
LOC107594821
Intersectin-2-like isoform X1.
    
 0.713
Actr5
Actin-related protein 5.
    
 0.684
LOC107558166
Dynactin subunit 2.
    
 0.671
ENSSGRP00000036700
Dynactin 2 (p50).
    
 0.671
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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