ENSSGRP00000001956 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSGRP00000001956

TNF superfamily member 12. (228 aa)

Predicted Functional Partners:

Tnfsf13b

0.881

ENSSGRP00000005120

0.786

LOC107561312

0.786

ENSSGRP00000006394

0.740

LOC107582292

0.740

ENSSGRP00000012506

0.710

LOC107587796

0.706

LOC107601304

0.648

LOC107590367

0.648

LOC107601131

0.646

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001956	ENSSGRP00000005120	ENSSGRP00000001956	ENSSGRP00000005120	TNF superfamily member 12.	annotation not available	0.786
ENSSGRP00000001956	ENSSGRP00000006394	ENSSGRP00000001956	ENSSGRP00000006394	TNF superfamily member 12.	annotation not available	0.740
ENSSGRP00000001956	ENSSGRP00000012506	ENSSGRP00000001956	ENSSGRP00000012506	TNF superfamily member 12.	Tumor necrosis factor ligand superfamily member 14.	0.710
ENSSGRP00000001956	LOC107561312	ENSSGRP00000001956	ENSSGRP00000020150	TNF superfamily member 12.	Tumor necrosis factor ligand superfamily member 11-like.	0.786
ENSSGRP00000001956	LOC107582292	ENSSGRP00000001956	ENSSGRP00000034096	TNF superfamily member 12.	Lymphotoxin alpha (TNF superfamily, member 1).	0.740
ENSSGRP00000001956	LOC107587796	ENSSGRP00000001956	ENSSGRP00000000771	TNF superfamily member 12.	Tumor necrosis factor receptor superfamily member 5-like isoform X1.	0.706
ENSSGRP00000001956	LOC107590367	ENSSGRP00000001956	ENSSGRP00000100983	TNF superfamily member 12.	Mitogen-activated protein kinase kinase kinase 14-like isoform X1.	0.648
ENSSGRP00000001956	LOC107601131	ENSSGRP00000001956	ENSSGRP00000055172	TNF superfamily member 12.	Tumor necrosis factor ligand superfamily member 5.	0.646
ENSSGRP00000001956	LOC107601304	ENSSGRP00000001956	ENSSGRP00000085301	TNF superfamily member 12.	Mitogen-activated protein kinase kinase kinase 14-like.	0.648
ENSSGRP00000001956	Tnfsf13b	ENSSGRP00000001956	ENSSGRP00000003610	TNF superfamily member 12.	Tumor necrosis factor ligand superfamily member 13B.	0.881
ENSSGRP00000005120	ENSSGRP00000001956	ENSSGRP00000005120	ENSSGRP00000001956	annotation not available	TNF superfamily member 12.	0.786
ENSSGRP00000005120	ENSSGRP00000006394	ENSSGRP00000005120	ENSSGRP00000006394	annotation not available	annotation not available	0.664
ENSSGRP00000005120	ENSSGRP00000012506	ENSSGRP00000005120	ENSSGRP00000012506	annotation not available	Tumor necrosis factor ligand superfamily member 14.	0.710
ENSSGRP00000005120	LOC107582292	ENSSGRP00000005120	ENSSGRP00000034096	annotation not available	Lymphotoxin alpha (TNF superfamily, member 1).	0.664
ENSSGRP00000005120	LOC107587796	ENSSGRP00000005120	ENSSGRP00000000771	annotation not available	Tumor necrosis factor receptor superfamily member 5-like isoform X1.	0.869
ENSSGRP00000005120	LOC107590367	ENSSGRP00000005120	ENSSGRP00000100983	annotation not available	Mitogen-activated protein kinase kinase kinase 14-like isoform X1.	0.654
ENSSGRP00000005120	LOC107601131	ENSSGRP00000005120	ENSSGRP00000055172	annotation not available	Tumor necrosis factor ligand superfamily member 5.	0.657
ENSSGRP00000005120	LOC107601304	ENSSGRP00000005120	ENSSGRP00000085301	annotation not available	Mitogen-activated protein kinase kinase kinase 14-like.	0.654
ENSSGRP00000005120	Tnfsf13b	ENSSGRP00000005120	ENSSGRP00000003610	annotation not available	Tumor necrosis factor ligand superfamily member 13B.	0.891
ENSSGRP00000006394	ENSSGRP00000001956	ENSSGRP00000006394	ENSSGRP00000001956	annotation not available	TNF superfamily member 12.	0.740