STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabpb2GA-binding protein transcription factor, beta. (407 aa)    
Predicted Functional Partners:
LOC107595806
GA-binding protein alpha chain-like isoform X1.
    
 0.930
LOC107597487
GA-binding protein transcription factor, alpha.
    
 0.930
ENSSGRP00000047663
Intraflagellar transport protein 81 homolog.
    
 0.588
casp2
Caspase-2 isoform X1.
    
  0.575
ENSSGRP00000063046
Caspase-2-like.
    
  0.575
ENSSGRP00000012205
Ig heavy chain Mem5-like.
   
  0.568
ift52
Intraflagellar transport protein 52 homolog.
    
 0.552
ENSSGRP00000079245
Zinc finger DHHC-type containing 13.
  
 
   0.512
LOC107596135
NF-kappa-B inhibitor alpha-like.
  
     0.499
ENSSGRP00000006432
Cathepsin B-like.
    
  0.494
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.