Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107581964AT-rich interactive domain-containing protein 5B-like isoform X1. (864 aa)    
Predicted Functional Partners:
LOC107598693
UPF0547 protein C16orf87 homolog.
    
 
 0.829
ENSSGRP00000096402
UPF0547 protein C16orf87 homolog.
    
 
 0.829
ENSSGRP00000019036
Probable histone deacetylase 1-B.
    
 0.702
LOC107584281
Probable histone deacetylase 1-B isoform X1.
    
 0.702
LOC107562876
Probable histone deacetylase 1-B.
    
 0.702
hdac8
Histone deacetylase 8 isoform X1.
    
 0.702
ENSSGRP00000109945
annotation not available
    
 0.702
ENSSGRP00000002626
annotation not available
      
 0.680
ENSSGRP00000080109
ADP-ribosylation factor-like protein 10.
      
 0.680
ENSSGRP00000106867
annotation not available
      
 0.680
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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