LOC107592128 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC107592128

Uncharacterized protein LOC107592128. (393 aa)

Predicted Functional Partners:

eftud2

0.443

ENSSGRP00000036461

0.443

ENSSGRP00000067252

0.443

ENSSGRP00000090701

0.415

ENSSGRP00000027763

0.411

ENSSGRP00000018836

0.409

ENSSGRP00000027762

0.409

ENSSGRP00000031077

0.406

LOC107602505

0.403

LOC107585253

0.403

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000018836	LOC107592128	ENSSGRP00000018836	ENSSGRP00000002005	annotation not available	Uncharacterized protein LOC107592128.	0.409
ENSSGRP00000027762	LOC107592128	ENSSGRP00000027762	ENSSGRP00000002005	annotation not available	Uncharacterized protein LOC107592128.	0.409
ENSSGRP00000027763	LOC107592128	ENSSGRP00000027763	ENSSGRP00000002005	Si:ch1073-406l10.2.	Uncharacterized protein LOC107592128.	0.411
ENSSGRP00000031077	LOC107592128	ENSSGRP00000031077	ENSSGRP00000002005	TANK-binding kinase 1-binding protein 1-like.	Uncharacterized protein LOC107592128.	0.406
ENSSGRP00000036461	ENSSGRP00000067252	ENSSGRP00000036461	ENSSGRP00000067252	annotation not available	Elongation factor Tu GTP binding domain containing 2.	0.541
ENSSGRP00000036461	LOC107592128	ENSSGRP00000036461	ENSSGRP00000002005	annotation not available	Uncharacterized protein LOC107592128.	0.443
ENSSGRP00000036461	eftud2	ENSSGRP00000036461	ENSSGRP00000036365	annotation not available	116 kDa U5 small nuclear ribonucleoprotein component.	0.540
ENSSGRP00000067252	ENSSGRP00000036461	ENSSGRP00000067252	ENSSGRP00000036461	Elongation factor Tu GTP binding domain containing 2.	annotation not available	0.541
ENSSGRP00000067252	LOC107592128	ENSSGRP00000067252	ENSSGRP00000002005	Elongation factor Tu GTP binding domain containing 2.	Uncharacterized protein LOC107592128.	0.443
ENSSGRP00000067252	eftud2	ENSSGRP00000067252	ENSSGRP00000036365	Elongation factor Tu GTP binding domain containing 2.	116 kDa U5 small nuclear ribonucleoprotein component.	0.543
ENSSGRP00000090701	LOC107592128	ENSSGRP00000090701	ENSSGRP00000002005	Si:ch1073-406l10.2.	Uncharacterized protein LOC107592128.	0.415
LOC107585253	LOC107592128	ENSSGRP00000047254	ENSSGRP00000002005	Protein phosphatase 1B-like.	Uncharacterized protein LOC107592128.	0.403
LOC107592128	ENSSGRP00000018836	ENSSGRP00000002005	ENSSGRP00000018836	Uncharacterized protein LOC107592128.	annotation not available	0.409
LOC107592128	ENSSGRP00000027762	ENSSGRP00000002005	ENSSGRP00000027762	Uncharacterized protein LOC107592128.	annotation not available	0.409
LOC107592128	ENSSGRP00000027763	ENSSGRP00000002005	ENSSGRP00000027763	Uncharacterized protein LOC107592128.	Si:ch1073-406l10.2.	0.411
LOC107592128	ENSSGRP00000031077	ENSSGRP00000002005	ENSSGRP00000031077	Uncharacterized protein LOC107592128.	TANK-binding kinase 1-binding protein 1-like.	0.406
LOC107592128	ENSSGRP00000036461	ENSSGRP00000002005	ENSSGRP00000036461	Uncharacterized protein LOC107592128.	annotation not available	0.443
LOC107592128	ENSSGRP00000067252	ENSSGRP00000002005	ENSSGRP00000067252	Uncharacterized protein LOC107592128.	Elongation factor Tu GTP binding domain containing 2.	0.443
LOC107592128	ENSSGRP00000090701	ENSSGRP00000002005	ENSSGRP00000090701	Uncharacterized protein LOC107592128.	Si:ch1073-406l10.2.	0.415
LOC107592128	LOC107585253	ENSSGRP00000002005	ENSSGRP00000047254	Uncharacterized protein LOC107592128.	Protein phosphatase 1B-like.	0.403