ENSSGRP00000002016 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSGRP00000002016

Uncharacterized protein LOC107592189. (381 aa)

Predicted Functional Partners:

ENSSGRP00000003283

0.521

ENSSGRP00000066691

0.520

ENSSGRP00000009815

0.502

ENSSGRP00000096384

0.493

ENSSGRP00000020044

0.489

ENSSGRP00000017288

0.486

ENSSGRP00000060875

0.479

ENSSGRP00000006904

0.448

ENSSGRP00000035105

0.435

ENSSGRP00000033170

0.413

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSSGRP00000002016	ENSSGRP00000003283	Uncharacterized protein LOC107592189.	Ras-associated and pleckstrin homology domains-containing protein 1-like.	0.521
ENSSGRP00000002016	ENSSGRP00000006904	Uncharacterized protein LOC107592189.	annotation not available	0.448
ENSSGRP00000002016	ENSSGRP00000009815	Uncharacterized protein LOC107592189.	Actinodin3.	0.502
ENSSGRP00000002016	ENSSGRP00000017288	Uncharacterized protein LOC107592189.	annotation not available	0.486
ENSSGRP00000002016	ENSSGRP00000020044	Uncharacterized protein LOC107592189.	annotation not available	0.489
ENSSGRP00000002016	ENSSGRP00000033170	Uncharacterized protein LOC107592189.	annotation not available	0.413
ENSSGRP00000002016	ENSSGRP00000035105	Uncharacterized protein LOC107592189.	annotation not available	0.435
ENSSGRP00000002016	ENSSGRP00000060875	Uncharacterized protein LOC107592189.	annotation not available	0.479
ENSSGRP00000002016	ENSSGRP00000066691	Uncharacterized protein LOC107592189.	Extensin-like.	0.520
ENSSGRP00000002016	ENSSGRP00000096384	Uncharacterized protein LOC107592189.	Actinodin3.	0.493
ENSSGRP00000003283	ENSSGRP00000002016	Ras-associated and pleckstrin homology domains-containing protein 1-like.	Uncharacterized protein LOC107592189.	0.521
ENSSGRP00000003283	ENSSGRP00000006904	Ras-associated and pleckstrin homology domains-containing protein 1-like.	annotation not available	0.404
ENSSGRP00000003283	ENSSGRP00000017288	Ras-associated and pleckstrin homology domains-containing protein 1-like.	annotation not available	0.434
ENSSGRP00000003283	ENSSGRP00000020044	Ras-associated and pleckstrin homology domains-containing protein 1-like.	annotation not available	0.415
ENSSGRP00000003283	ENSSGRP00000060875	Ras-associated and pleckstrin homology domains-containing protein 1-like.	annotation not available	0.469
ENSSGRP00000006904	ENSSGRP00000002016	annotation not available	Uncharacterized protein LOC107592189.	0.448
ENSSGRP00000006904	ENSSGRP00000003283	annotation not available	Ras-associated and pleckstrin homology domains-containing protein 1-like.	0.404
ENSSGRP00000006904	ENSSGRP00000017288	annotation not available	annotation not available	0.488
ENSSGRP00000006904	ENSSGRP00000020044	annotation not available	annotation not available	0.510
ENSSGRP00000006904	ENSSGRP00000033170	annotation not available	annotation not available	0.500