LOC107592141 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107592141

Nuclear receptor subfamily 2 group F member 5-like. (403 aa)

Predicted Functional Partners:

ENSSGRP00000088553

0.651

ENSSGRP00000107292

0.651

med1

0.591

Ncor2

0.583

ENSSGRP00000112066

0.583

Polr3a

0.427

POLR2B

0.403

POLR2B-2

0.403

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000088553	LOC107592141	ENSSGRP00000088553	ENSSGRP00000002104	Nuclear receptor corepressor 1-like.	Nuclear receptor subfamily 2 group F member 5-like.	0.651
ENSSGRP00000088553	med1	ENSSGRP00000088553	ENSSGRP00000087272	Nuclear receptor corepressor 1-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.764
ENSSGRP00000107292	LOC107592141	ENSSGRP00000107292	ENSSGRP00000002104	Nuclear receptor corepressor 1-like.	Nuclear receptor subfamily 2 group F member 5-like.	0.651
ENSSGRP00000107292	med1	ENSSGRP00000107292	ENSSGRP00000087272	Nuclear receptor corepressor 1-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.764
ENSSGRP00000112066	LOC107592141	ENSSGRP00000112066	ENSSGRP00000002104	Nuclear receptor corepressor 2-like.	Nuclear receptor subfamily 2 group F member 5-like.	0.583
ENSSGRP00000112066	med1	ENSSGRP00000112066	ENSSGRP00000087272	Nuclear receptor corepressor 2-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.764
LOC107592141	ENSSGRP00000088553	ENSSGRP00000002104	ENSSGRP00000088553	Nuclear receptor subfamily 2 group F member 5-like.	Nuclear receptor corepressor 1-like.	0.651
LOC107592141	ENSSGRP00000107292	ENSSGRP00000002104	ENSSGRP00000107292	Nuclear receptor subfamily 2 group F member 5-like.	Nuclear receptor corepressor 1-like.	0.651
LOC107592141	ENSSGRP00000112066	ENSSGRP00000002104	ENSSGRP00000112066	Nuclear receptor subfamily 2 group F member 5-like.	Nuclear receptor corepressor 2-like.	0.583
LOC107592141	Ncor2	ENSSGRP00000002104	ENSSGRP00000032269	Nuclear receptor subfamily 2 group F member 5-like.	Nuclear receptor corepressor 2 isoform X1.	0.583
LOC107592141	POLR2B	ENSSGRP00000002104	ENSSGRP00000013446	Nuclear receptor subfamily 2 group F member 5-like.	RNA polymerase II subunit B.	0.403
LOC107592141	POLR2B-2	ENSSGRP00000002104	ENSSGRP00000073682	Nuclear receptor subfamily 2 group F member 5-like.	DNA-directed RNA polymerase II subunit RPB2 isoform X1.	0.403
LOC107592141	Polr3a	ENSSGRP00000002104	ENSSGRP00000067006	Nuclear receptor subfamily 2 group F member 5-like.	LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1.	0.427
LOC107592141	med1	ENSSGRP00000002104	ENSSGRP00000087272	Nuclear receptor subfamily 2 group F member 5-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.591
Ncor2	LOC107592141	ENSSGRP00000032269	ENSSGRP00000002104	Nuclear receptor corepressor 2 isoform X1.	Nuclear receptor subfamily 2 group F member 5-like.	0.583
Ncor2	med1	ENSSGRP00000032269	ENSSGRP00000087272	Nuclear receptor corepressor 2 isoform X1.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.764
POLR2B	LOC107592141	ENSSGRP00000013446	ENSSGRP00000002104	RNA polymerase II subunit B.	Nuclear receptor subfamily 2 group F member 5-like.	0.403
POLR2B	Polr3a	ENSSGRP00000013446	ENSSGRP00000067006	RNA polymerase II subunit B.	LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1.	0.984
POLR2B	med1	ENSSGRP00000013446	ENSSGRP00000087272	RNA polymerase II subunit B.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.962
POLR2B-2	LOC107592141	ENSSGRP00000073682	ENSSGRP00000002104	DNA-directed RNA polymerase II subunit RPB2 isoform X1.	Nuclear receptor subfamily 2 group F member 5-like.	0.403