LOC107581937 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC107581937

PDZ domain-containing RING finger protein 4-like isoform X1. (798 aa)

Predicted Functional Partners:

ENSSGRP00000034836

0.800

ENSSGRP00000083184

0.775

Mib2

0.775

LOC107577855

0.685

LOC107589146

0.685

LOC107572061

0.670

ENSSGRP00000000760

0.667

LOC107583536

0.667

LOC107552706

0.610

LOC107597881

0.575

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000760	ENSSGRP00000034836	ENSSGRP00000000760	ENSSGRP00000034836	Baculoviral IAP repeat-containing protein 6 (apollon).	RING finger protein 223-like.	0.901
ENSSGRP00000000760	ENSSGRP00000083184	ENSSGRP00000000760	ENSSGRP00000083184	Baculoviral IAP repeat-containing protein 6 (apollon).	Mindbomb E3 ubiquitin protein ligase 2.	0.644
ENSSGRP00000000760	LOC107572061	ENSSGRP00000000760	ENSSGRP00000051983	Baculoviral IAP repeat-containing protein 6 (apollon).	Ubiquitin-conjugating enzyme E2 variant 1.	0.986
ENSSGRP00000000760	LOC107577855	ENSSGRP00000000760	ENSSGRP00000045882	Baculoviral IAP repeat-containing protein 6 (apollon).	Receptor-interacting serine/threonine-protein kinase 4-like.	0.720
ENSSGRP00000000760	LOC107581937	ENSSGRP00000000760	ENSSGRP00000002152	Baculoviral IAP repeat-containing protein 6 (apollon).	PDZ domain-containing RING finger protein 4-like isoform X1.	0.667
ENSSGRP00000000760	LOC107583536	ENSSGRP00000000760	ENSSGRP00000000921	Baculoviral IAP repeat-containing protein 6 (apollon).	Baculoviral IAP repeat-containing protein 6-like isoform X1.	0.878
ENSSGRP00000000760	LOC107589146	ENSSGRP00000000760	ENSSGRP00000060177	Baculoviral IAP repeat-containing protein 6 (apollon).	Receptor-interacting serine/threonine-protein kinase 4-like isoform X1.	0.720
ENSSGRP00000000760	Mib2	ENSSGRP00000000760	ENSSGRP00000085340	Baculoviral IAP repeat-containing protein 6 (apollon).	E3 ubiquitin-protein ligase MIB2 isoform X1.	0.644
ENSSGRP00000034836	ENSSGRP00000000760	ENSSGRP00000034836	ENSSGRP00000000760	RING finger protein 223-like.	Baculoviral IAP repeat-containing protein 6 (apollon).	0.901
ENSSGRP00000034836	ENSSGRP00000083184	ENSSGRP00000034836	ENSSGRP00000083184	RING finger protein 223-like.	Mindbomb E3 ubiquitin protein ligase 2.	0.902
ENSSGRP00000034836	LOC107572061	ENSSGRP00000034836	ENSSGRP00000051983	RING finger protein 223-like.	Ubiquitin-conjugating enzyme E2 variant 1.	0.505
ENSSGRP00000034836	LOC107577855	ENSSGRP00000034836	ENSSGRP00000045882	RING finger protein 223-like.	Receptor-interacting serine/threonine-protein kinase 4-like.	0.887
ENSSGRP00000034836	LOC107581937	ENSSGRP00000034836	ENSSGRP00000002152	RING finger protein 223-like.	PDZ domain-containing RING finger protein 4-like isoform X1.	0.800
ENSSGRP00000034836	LOC107583536	ENSSGRP00000034836	ENSSGRP00000000921	RING finger protein 223-like.	Baculoviral IAP repeat-containing protein 6-like isoform X1.	0.901
ENSSGRP00000034836	LOC107589146	ENSSGRP00000034836	ENSSGRP00000060177	RING finger protein 223-like.	Receptor-interacting serine/threonine-protein kinase 4-like isoform X1.	0.887
ENSSGRP00000034836	LOC107597881	ENSSGRP00000034836	ENSSGRP00000075295	RING finger protein 223-like.	Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial-like.	0.524
ENSSGRP00000034836	Mib2	ENSSGRP00000034836	ENSSGRP00000085340	RING finger protein 223-like.	E3 ubiquitin-protein ligase MIB2 isoform X1.	0.902
ENSSGRP00000083184	ENSSGRP00000000760	ENSSGRP00000083184	ENSSGRP00000000760	Mindbomb E3 ubiquitin protein ligase 2.	Baculoviral IAP repeat-containing protein 6 (apollon).	0.644
ENSSGRP00000083184	ENSSGRP00000034836	ENSSGRP00000083184	ENSSGRP00000034836	Mindbomb E3 ubiquitin protein ligase 2.	RING finger protein 223-like.	0.902
ENSSGRP00000083184	LOC107572061	ENSSGRP00000083184	ENSSGRP00000051983	Mindbomb E3 ubiquitin protein ligase 2.	Ubiquitin-conjugating enzyme E2 variant 1.	0.847