STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107584113Probable E3 ubiquitin-protein ligase MGRN1 isoform X1. (556 aa)    
Predicted Functional Partners:
ENSSGRP00000106720
Smoothened homolog.
     
 0.902
LOC107587928
Inactive rhomboid protein 1.
      
 0.631
Mc1r
Melanocyte-stimulating hormone receptor.
    
 
 0.582
LOC107596807
Inactive rhomboid protein 1-like isoform X1.
      
 0.522
polr3k
DNA-directed RNA polymerase III subunit RPC10.
      
 0.510
ENSSGRP00000063586
Polymerase (RNA) III (DNA directed) polypeptide K.
      
 0.510
atrnl1
Attractin-like protein 1.
   
 
 0.500
ENSSGRP00000017556
annotation not available
   
 
 0.500
ENSSGRP00000022845
Attractin-like protein 1.
   
 
 0.500
ENSSGRP00000034726
Attractin-like 1b.
   
 
 0.500
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.