STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107592145RNA-binding protein 8A. (174 aa)    
Predicted Functional Partners:
LOC107585897
Protein mago nashi homolog.
   
 0.999
LOC107549138
Protein mago nashi homolog.
   
 0.999
eif4a3
Eukaryotic initiation factor 4A-III.
   
 0.999
LOC107585049
Protein CASC3.
   
 0.999
ENSSGRP00000099256
Protein CASC3-like.
   
 0.999
ENSSGRP00000033138
Partner of Y14 and mago B-like.
    
 0.998
LOC107572958
Partner of Y14 and mago-like.
    
 0.998
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.990
ENSSGRP00000099627
annotation not available
    
 0.990
LOC107601591
RNA-binding protein with serine-rich domain 1.
   
0.988
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.