STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000003708LHFPL tetraspan subfamily member 5b. (209 aa)    
Predicted Functional Partners:
ENSSGRP00000048147
Protocadherin-related 15a.
   
 0.769
ENSSGRP00000078411
Protocadherin-15-like.
   
 0.769
TMC1
Transmembrane channel-like protein 1.
   
 
 0.761
TMC1-2
Transmembrane channel like 1.
   
 
 0.761
ENSSGRP00000003319
Protocadherin-related 15b.
   
 0.680
ENSSGRP00000022661
Protocadherin-15-like.
   
 0.680
LOC107561140
Cadherin-related family member 5-like.
   
 0.653
ENSSGRP00000044311
Transmembrane channel-like 2b.
     
 0.652
ENSSGRP00000018065
Transmembrane inner ear expressed protein-like.
     
 0.591
ENSSGRP00000104815
Transmembrane inner ear expressed protein.
     
 0.591
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.