Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSSGRP00000003752Serine/arginine repetitive matrix protein 1-like isoform X1. (500 aa)    
Predicted Functional Partners:
polr2d
DNA-directed RNA polymerase II subunit RPB4.
   
 0.943
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.939
ENSSGRP00000046309
annotation not available
   
 0.923
LOC107550080
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
 0.923
ENSSGRP00000004141
annotation not available
   
 0.922
POLR2C
DNA-directed RNA polymerase II subunit RPB3-like.
   
 0.922
LOC107591514
Transcription elongation factor SPT4-like.
   
 0.922
LOC107563417
Transcription elongation factor SPT4 isoform X1.
   
 0.922
LOC107569681
DNA-directed RNA polymerases I, II, and III subunit RPABC3.
   
 0.918
ENSSGRP00000080220
DNA-directed RNA polymerases I, II, and III subunit RPABC3-like.
   
 0.918
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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