ENSSGRP00000004151 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004151	ENSSGRP00000005927	ENSSGRP00000004151	ENSSGRP00000005927	annotation not available	E3 ubiquitin-protein ligase BRE1A-like.	0.870
ENSSGRP00000004151	ENSSGRP00000012254	ENSSGRP00000004151	ENSSGRP00000012254	annotation not available	annotation not available	0.848
ENSSGRP00000004151	ENSSGRP00000040577	ENSSGRP00000004151	ENSSGRP00000040577	annotation not available	Ring finger protein 20, E3 ubiquitin protein ligase.	0.870
ENSSGRP00000004151	ENSSGRP00000069786	ENSSGRP00000004151	ENSSGRP00000069786	annotation not available	RNA binding motif protein 25a.	0.848
ENSSGRP00000004151	ENSSGRP00000073400	ENSSGRP00000004151	ENSSGRP00000073400	annotation not available	RNA binding motif protein 25b.	0.848
ENSSGRP00000004151	LOC107563784	ENSSGRP00000004151	ENSSGRP00000094153	annotation not available	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.870
ENSSGRP00000004151	LOC107565773	ENSSGRP00000004151	ENSSGRP00000033720	annotation not available	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.870
ENSSGRP00000004151	LOC107588581	ENSSGRP00000004151	ENSSGRP00000059178	annotation not available	RNA-binding protein 25-like.	0.848
ENSSGRP00000004151	Rbm25	ENSSGRP00000004151	ENSSGRP00000094726	annotation not available	RNA-binding protein 25.	0.848
ENSSGRP00000004151	Rnf20	ENSSGRP00000004151	ENSSGRP00000001604	annotation not available	E3 ubiquitin-protein ligase BRE1A isoform X1.	0.870
ENSSGRP00000005927	ENSSGRP00000004151	ENSSGRP00000005927	ENSSGRP00000004151	E3 ubiquitin-protein ligase BRE1A-like.	annotation not available	0.870
ENSSGRP00000005927	ENSSGRP00000040577	ENSSGRP00000005927	ENSSGRP00000040577	E3 ubiquitin-protein ligase BRE1A-like.	Ring finger protein 20, E3 ubiquitin protein ligase.	0.549
ENSSGRP00000005927	LOC107563784	ENSSGRP00000005927	ENSSGRP00000094153	E3 ubiquitin-protein ligase BRE1A-like.	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.544
ENSSGRP00000005927	LOC107565773	ENSSGRP00000005927	ENSSGRP00000033720	E3 ubiquitin-protein ligase BRE1A-like.	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.544
ENSSGRP00000005927	Rnf20	ENSSGRP00000005927	ENSSGRP00000001604	E3 ubiquitin-protein ligase BRE1A-like.	E3 ubiquitin-protein ligase BRE1A isoform X1.	0.543
ENSSGRP00000012254	ENSSGRP00000004151	ENSSGRP00000012254	ENSSGRP00000004151	annotation not available	annotation not available	0.848
ENSSGRP00000040577	ENSSGRP00000004151	ENSSGRP00000040577	ENSSGRP00000004151	Ring finger protein 20, E3 ubiquitin protein ligase.	annotation not available	0.870
ENSSGRP00000040577	ENSSGRP00000005927	ENSSGRP00000040577	ENSSGRP00000005927	Ring finger protein 20, E3 ubiquitin protein ligase.	E3 ubiquitin-protein ligase BRE1A-like.	0.549
ENSSGRP00000040577	LOC107563784	ENSSGRP00000040577	ENSSGRP00000094153	Ring finger protein 20, E3 ubiquitin protein ligase.	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.557
ENSSGRP00000040577	LOC107565773	ENSSGRP00000040577	ENSSGRP00000033720	Ring finger protein 20, E3 ubiquitin protein ligase.	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.556