LOC107580525 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107580525

Vesicle transport protein SEC20-like. (229 aa)

Predicted Functional Partners:

ENSSGRP00000053014

0.963

ENSSGRP00000072071

0.963

LOC107585928

0.953

LOC107548814

0.953

LOC107559355

0.953

LOC107551653

0.646

ENSSGRP00000098514

0.646

ENSSGRP00000021167

0.580

ENSSGRP00000029848

0.580

napg

0.580

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000021167	ENSSGRP00000029848	ENSSGRP00000021167	ENSSGRP00000029848	Gamma-soluble NSF attachment protein-like.	N-ethylmaleimide-sensitive factor b.	0.870
ENSSGRP00000021167	ENSSGRP00000053014	ENSSGRP00000021167	ENSSGRP00000053014	Gamma-soluble NSF attachment protein-like.	Unconventional SNARE in the endoplasmic reticulum protein 1.	0.716
ENSSGRP00000021167	ENSSGRP00000072071	ENSSGRP00000021167	ENSSGRP00000072071	Gamma-soluble NSF attachment protein-like.	Unconventional SNARE in the endoplasmic reticulum protein 1.	0.716
ENSSGRP00000021167	LOC107548814	ENSSGRP00000021167	ENSSGRP00000026513	Gamma-soluble NSF attachment protein-like.	Vesicle-trafficking protein SEC22b-B isoform X1.	0.718
ENSSGRP00000021167	LOC107559355	ENSSGRP00000021167	ENSSGRP00000063625	Gamma-soluble NSF attachment protein-like.	Vesicle-trafficking protein SEC22b-A.	0.687
ENSSGRP00000021167	LOC107580525	ENSSGRP00000021167	ENSSGRP00000004170	Gamma-soluble NSF attachment protein-like.	Vesicle transport protein SEC20-like.	0.580
ENSSGRP00000021167	LOC107585928	ENSSGRP00000021167	ENSSGRP00000022049	Gamma-soluble NSF attachment protein-like.	Vesicle-trafficking protein SEC22b-B-like isoform X1.	0.718
ENSSGRP00000029848	ENSSGRP00000021167	ENSSGRP00000029848	ENSSGRP00000021167	N-ethylmaleimide-sensitive factor b.	Gamma-soluble NSF attachment protein-like.	0.870
ENSSGRP00000029848	ENSSGRP00000053014	ENSSGRP00000029848	ENSSGRP00000053014	N-ethylmaleimide-sensitive factor b.	Unconventional SNARE in the endoplasmic reticulum protein 1.	0.755
ENSSGRP00000029848	ENSSGRP00000072071	ENSSGRP00000029848	ENSSGRP00000072071	N-ethylmaleimide-sensitive factor b.	Unconventional SNARE in the endoplasmic reticulum protein 1.	0.755
ENSSGRP00000029848	ENSSGRP00000098514	ENSSGRP00000029848	ENSSGRP00000098514	N-ethylmaleimide-sensitive factor b.	Centromere/kinetochore protein zw10 homolog.	0.766
ENSSGRP00000029848	LOC107548814	ENSSGRP00000029848	ENSSGRP00000026513	N-ethylmaleimide-sensitive factor b.	Vesicle-trafficking protein SEC22b-B isoform X1.	0.796
ENSSGRP00000029848	LOC107551653	ENSSGRP00000029848	ENSSGRP00000031182	N-ethylmaleimide-sensitive factor b.	Centromere/kinetochore protein zw10 homolog isoform X1.	0.766
ENSSGRP00000029848	LOC107559355	ENSSGRP00000029848	ENSSGRP00000063625	N-ethylmaleimide-sensitive factor b.	Vesicle-trafficking protein SEC22b-A.	0.777
ENSSGRP00000029848	LOC107580525	ENSSGRP00000029848	ENSSGRP00000004170	N-ethylmaleimide-sensitive factor b.	Vesicle transport protein SEC20-like.	0.580
ENSSGRP00000029848	LOC107585928	ENSSGRP00000029848	ENSSGRP00000022049	N-ethylmaleimide-sensitive factor b.	Vesicle-trafficking protein SEC22b-B-like isoform X1.	0.796
ENSSGRP00000029848	napg	ENSSGRP00000029848	ENSSGRP00000030208	N-ethylmaleimide-sensitive factor b.	NSF attachment protein gamma.	0.870
ENSSGRP00000053014	ENSSGRP00000021167	ENSSGRP00000053014	ENSSGRP00000021167	Unconventional SNARE in the endoplasmic reticulum protein 1.	Gamma-soluble NSF attachment protein-like.	0.716
ENSSGRP00000053014	ENSSGRP00000029848	ENSSGRP00000053014	ENSSGRP00000029848	Unconventional SNARE in the endoplasmic reticulum protein 1.	N-ethylmaleimide-sensitive factor b.	0.755
ENSSGRP00000053014	ENSSGRP00000072071	ENSSGRP00000053014	ENSSGRP00000072071	Unconventional SNARE in the endoplasmic reticulum protein 1.	Unconventional SNARE in the endoplasmic reticulum protein 1.	0.901