STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kdm8LOW QUALITY PROTEIN: lysine-specific demethylase 8. (301 aa)    
Predicted Functional Partners:
ENSSGRP00000010065
annotation not available
    
 
 0.803
ENSSGRP00000043897
annotation not available
    
 
 0.803
LOC107603014
Small subunit ribosomal protein S6e.
    
   0.728
ENSSGRP00000059789
annotation not available
    
   0.728
LOC107551827
40S ribosomal protein S6.
    
   0.728
ENSSGRP00000107139
Jumonji domain containing 4.
      
 0.645
Mina
Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA.
      
 0.623
LOC107590564
Rab GTPase-binding effector protein 2-like.
      
 0.619
ENSSGRP00000092711
Rab GTPase-binding effector protein 2-like.
      
 0.619
JMJD6
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform X1.
      
 0.618
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.