LOC107575923 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107575923

Histone H2A-like. (128 aa)

Predicted Functional Partners:

LOC107597795

0.978

ENSSGRP00000110057

0.978

ENSSGRP00000005083

0.812

LOC107569589

0.812

LOC107569589-2

0.812

LOC107575987

0.812

LOC107581013

0.792

ENSSGRP00000006318

0.792

ENSSGRP00000019083

0.792

ENSSGRP00000022136

0.792

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005083	ENSSGRP00000110057	ENSSGRP00000005083	ENSSGRP00000110057	Histone H2B.	Myb-like, SWIRM and MPN domains 1.	0.527
ENSSGRP00000005083	LOC107575923	ENSSGRP00000005083	ENSSGRP00000004518	Histone H2B.	Histone H2A-like.	0.812
ENSSGRP00000005083	LOC107597795	ENSSGRP00000005083	ENSSGRP00000068610	Histone H2B.	Histone H2A deubiquitinase MYSM1-like.	0.527
ENSSGRP00000006318	ENSSGRP00000110057	ENSSGRP00000006318	ENSSGRP00000110057	annotation not available	Myb-like, SWIRM and MPN domains 1.	0.527
ENSSGRP00000006318	LOC107575923	ENSSGRP00000006318	ENSSGRP00000004518	annotation not available	Histone H2A-like.	0.792
ENSSGRP00000006318	LOC107597795	ENSSGRP00000006318	ENSSGRP00000068610	annotation not available	Histone H2A deubiquitinase MYSM1-like.	0.527
ENSSGRP00000019083	ENSSGRP00000110057	ENSSGRP00000019083	ENSSGRP00000110057	annotation not available	Myb-like, SWIRM and MPN domains 1.	0.527
ENSSGRP00000019083	LOC107575923	ENSSGRP00000019083	ENSSGRP00000004518	annotation not available	Histone H2A-like.	0.792
ENSSGRP00000019083	LOC107597795	ENSSGRP00000019083	ENSSGRP00000068610	annotation not available	Histone H2A deubiquitinase MYSM1-like.	0.527
ENSSGRP00000022136	ENSSGRP00000110057	ENSSGRP00000022136	ENSSGRP00000110057	annotation not available	Myb-like, SWIRM and MPN domains 1.	0.527
ENSSGRP00000022136	LOC107575923	ENSSGRP00000022136	ENSSGRP00000004518	annotation not available	Histone H2A-like.	0.792
ENSSGRP00000022136	LOC107597795	ENSSGRP00000022136	ENSSGRP00000068610	annotation not available	Histone H2A deubiquitinase MYSM1-like.	0.527
ENSSGRP00000110057	ENSSGRP00000005083	ENSSGRP00000110057	ENSSGRP00000005083	Myb-like, SWIRM and MPN domains 1.	Histone H2B.	0.527
ENSSGRP00000110057	ENSSGRP00000006318	ENSSGRP00000110057	ENSSGRP00000006318	Myb-like, SWIRM and MPN domains 1.	annotation not available	0.527
ENSSGRP00000110057	ENSSGRP00000019083	ENSSGRP00000110057	ENSSGRP00000019083	Myb-like, SWIRM and MPN domains 1.	annotation not available	0.527
ENSSGRP00000110057	ENSSGRP00000022136	ENSSGRP00000110057	ENSSGRP00000022136	Myb-like, SWIRM and MPN domains 1.	annotation not available	0.527
ENSSGRP00000110057	LOC107569589	ENSSGRP00000110057	ENSSGRP00000005110	Myb-like, SWIRM and MPN domains 1.	Histone H2B.	0.527
ENSSGRP00000110057	LOC107569589-2	ENSSGRP00000110057	ENSSGRP00000006104	Myb-like, SWIRM and MPN domains 1.	Histone H2B.	0.527
ENSSGRP00000110057	LOC107575923	ENSSGRP00000110057	ENSSGRP00000004518	Myb-like, SWIRM and MPN domains 1.	Histone H2A-like.	0.978
ENSSGRP00000110057	LOC107575987	ENSSGRP00000110057	ENSSGRP00000018334	Myb-like, SWIRM and MPN domains 1.	Histone H2B-like.	0.527