LOC107564044 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107564044

Tyrosine-protein kinase Fer-like. (822 aa)

Predicted Functional Partners:

LOC107558136

0.943

ENSSGRP00000069253

0.943

ctnnb1

0.924

LOC107570993

0.924

ENSSGRP00000067405

0.924

LOC107592060

0.924

ENSSGRP00000076696

0.911

ENSSGRP00000000292

0.712

ENSSGRP00000085714

0.645

LOC107572933

0.609

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000292	LOC107564044	ENSSGRP00000000292	ENSSGRP00000004807	Dihydropyrimidinase like 3.	Tyrosine-protein kinase Fer-like.	0.712
ENSSGRP00000067405	ENSSGRP00000076696	ENSSGRP00000067405	ENSSGRP00000076696	Catenin beta-1-like.	Catenin (cadherin-associated protein), delta 1.	0.830
ENSSGRP00000067405	LOC107564044	ENSSGRP00000067405	ENSSGRP00000004807	Catenin beta-1-like.	Tyrosine-protein kinase Fer-like.	0.924
ENSSGRP00000067405	LOC107570993	ENSSGRP00000067405	ENSSGRP00000047498	Catenin beta-1-like.	Catenin beta-1 isoform X1.	0.900
ENSSGRP00000067405	LOC107592060	ENSSGRP00000067405	ENSSGRP00000099877	Catenin beta-1-like.	Catenin beta-1-like.	0.908
ENSSGRP00000067405	ctnnb1	ENSSGRP00000067405	ENSSGRP00000010620	Catenin beta-1-like.	Catenin beta 1.	0.908
ENSSGRP00000069253	ENSSGRP00000076696	ENSSGRP00000069253	ENSSGRP00000076696	Tyrosine-protein kinase Yes.	Catenin (cadherin-associated protein), delta 1.	0.910
ENSSGRP00000069253	LOC107558136	ENSSGRP00000069253	ENSSGRP00000043477	Tyrosine-protein kinase Yes.	Tyrosine-protein kinase yes-like.	0.901
ENSSGRP00000069253	LOC107564044	ENSSGRP00000069253	ENSSGRP00000004807	Tyrosine-protein kinase Yes.	Tyrosine-protein kinase Fer-like.	0.943
ENSSGRP00000069253	LOC107572933	ENSSGRP00000069253	ENSSGRP00000084655	Tyrosine-protein kinase Yes.	Kit ligand-like.	0.432
ENSSGRP00000076696	ENSSGRP00000067405	ENSSGRP00000076696	ENSSGRP00000067405	Catenin (cadherin-associated protein), delta 1.	Catenin beta-1-like.	0.830
ENSSGRP00000076696	ENSSGRP00000069253	ENSSGRP00000076696	ENSSGRP00000069253	Catenin (cadherin-associated protein), delta 1.	Tyrosine-protein kinase Yes.	0.910
ENSSGRP00000076696	LOC107558136	ENSSGRP00000076696	ENSSGRP00000043477	Catenin (cadherin-associated protein), delta 1.	Tyrosine-protein kinase yes-like.	0.910
ENSSGRP00000076696	LOC107564044	ENSSGRP00000076696	ENSSGRP00000004807	Catenin (cadherin-associated protein), delta 1.	Tyrosine-protein kinase Fer-like.	0.911
ENSSGRP00000076696	LOC107570993	ENSSGRP00000076696	ENSSGRP00000047498	Catenin (cadherin-associated protein), delta 1.	Catenin beta-1 isoform X1.	0.830
ENSSGRP00000076696	LOC107592060	ENSSGRP00000076696	ENSSGRP00000099877	Catenin (cadherin-associated protein), delta 1.	Catenin beta-1-like.	0.830
ENSSGRP00000076696	ctnnb1	ENSSGRP00000076696	ENSSGRP00000010620	Catenin (cadherin-associated protein), delta 1.	Catenin beta 1.	0.830
ENSSGRP00000085714	LOC107564044	ENSSGRP00000085714	ENSSGRP00000004807	Dihydropyrimidinase-related protein 3.	Tyrosine-protein kinase Fer-like.	0.645
LOC107558136	ENSSGRP00000069253	ENSSGRP00000043477	ENSSGRP00000069253	Tyrosine-protein kinase yes-like.	Tyrosine-protein kinase Yes.	0.901
LOC107558136	ENSSGRP00000076696	ENSSGRP00000043477	ENSSGRP00000076696	Tyrosine-protein kinase yes-like.	Catenin (cadherin-associated protein), delta 1.	0.910