RPS15A protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPS15A

Small subunit ribosomal protein S15Ae. (91 aa)

Predicted Functional Partners:

LOC107549111

0.995

FAU

0.993

ENSSGRP00000003561

0.993

LOC107567395

0.993

LOC107555153

0.993

rps29

0.989

ENSSGRP00000010538

0.989

RPS15

0.987

LOC107567812

0.987

rps15

0.987

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003561	ENSSGRP00000010538	ENSSGRP00000003561	ENSSGRP00000010538	FAU ubiquitin like and ribosomal protein S30 fusion b.	annotation not available	0.998
ENSSGRP00000003561	FAU	ENSSGRP00000003561	ENSSGRP00000002790	FAU ubiquitin like and ribosomal protein S30 fusion b.	Small subunit ribosomal protein S30e.	0.994
ENSSGRP00000003561	LOC107549111	ENSSGRP00000003561	ENSSGRP00000055247	FAU ubiquitin like and ribosomal protein S30 fusion b.	Small subunit ribosomal protein S7e.	0.999
ENSSGRP00000003561	LOC107555153	ENSSGRP00000003561	ENSSGRP00000074935	FAU ubiquitin like and ribosomal protein S30 fusion b.	Small subunit ribosomal protein S30e.	0.992
ENSSGRP00000003561	LOC107567395	ENSSGRP00000003561	ENSSGRP00000037275	FAU ubiquitin like and ribosomal protein S30 fusion b.	Small subunit ribosomal protein S30e.	0.994
ENSSGRP00000003561	LOC107567812	ENSSGRP00000003561	ENSSGRP00000007261	FAU ubiquitin like and ribosomal protein S30 fusion b.	40S ribosomal protein S18-like.	0.998
ENSSGRP00000003561	RPS15	ENSSGRP00000003561	ENSSGRP00000004631	FAU ubiquitin like and ribosomal protein S30 fusion b.	Ribosomal protein S15.	0.999
ENSSGRP00000003561	RPS15A	ENSSGRP00000003561	ENSSGRP00000004841	FAU ubiquitin like and ribosomal protein S30 fusion b.	Small subunit ribosomal protein S15Ae.	0.993
ENSSGRP00000003561	rps15	ENSSGRP00000003561	ENSSGRP00000020780	FAU ubiquitin like and ribosomal protein S30 fusion b.	Small subunit ribosomal protein S15e.	0.999
ENSSGRP00000003561	rps29	ENSSGRP00000003561	ENSSGRP00000003186	FAU ubiquitin like and ribosomal protein S30 fusion b.	Small subunit ribosomal protein S29e.	0.998
ENSSGRP00000010538	ENSSGRP00000003561	ENSSGRP00000010538	ENSSGRP00000003561	annotation not available	FAU ubiquitin like and ribosomal protein S30 fusion b.	0.998
ENSSGRP00000010538	FAU	ENSSGRP00000010538	ENSSGRP00000002790	annotation not available	Small subunit ribosomal protein S30e.	0.998
ENSSGRP00000010538	LOC107549111	ENSSGRP00000010538	ENSSGRP00000055247	annotation not available	Small subunit ribosomal protein S7e.	0.999
ENSSGRP00000010538	LOC107555153	ENSSGRP00000010538	ENSSGRP00000074935	annotation not available	Small subunit ribosomal protein S30e.	0.998
ENSSGRP00000010538	LOC107567395	ENSSGRP00000010538	ENSSGRP00000037275	annotation not available	Small subunit ribosomal protein S30e.	0.998
ENSSGRP00000010538	LOC107567812	ENSSGRP00000010538	ENSSGRP00000007261	annotation not available	40S ribosomal protein S18-like.	0.998
ENSSGRP00000010538	RPS15	ENSSGRP00000010538	ENSSGRP00000004631	annotation not available	Ribosomal protein S15.	0.999
ENSSGRP00000010538	RPS15A	ENSSGRP00000010538	ENSSGRP00000004841	annotation not available	Small subunit ribosomal protein S15Ae.	0.989
ENSSGRP00000010538	rps15	ENSSGRP00000010538	ENSSGRP00000020780	annotation not available	Small subunit ribosomal protein S15e.	0.999
ENSSGRP00000010538	rps29	ENSSGRP00000010538	ENSSGRP00000003186	annotation not available	Small subunit ribosomal protein S29e.	0.544