STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000004972Sequestosome-1-like. (90 aa)    
Predicted Functional Partners:
LOC107552995
Gamma-aminobutyric acid receptor-associated protein.
   
 0.974
LOC107599946
Gamma-aminobutyric acid receptor-associated protein-like.
   
 0.974
ENSSGRP00000074074
Gamma-aminobutyric acid receptor-associated protein-like.
   
 0.974
LOC107560072
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.974
LOC107561249
Serine/threonine-protein kinase TBK1-like isoform X1.
    
 0.970
Atm
Serine-protein kinase ATM.
     
 0.965
LOC107549485
Gamma-aminobutyric acid receptor-associated protein-like 1 isoform X1.
   
 0.963
Ripk1
Receptor-interacting serine/threonine-protein kinase 1.
   
 0.956
LOC107562521
TNF receptor-associated factor 6-like.
    
 0.938
ENSSGRP00000102158
TNF receptor-associated factor 6-like.
    
 0.938
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.