STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000005325annotation not available (375 aa)    
Predicted Functional Partners:
prpf4
U4/U6 small nuclear ribonucleoprotein PRP4.
    
 0.996
ENSSGRP00000087764
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.994
PRPF6
Pre-mRNA-processing factor 6 isoform X1.
   
 0.994
ENSSGRP00000000245
Splicing factor 3a, subunit 2.
   
 
 0.993
LOC107552837
U4/U6 small nuclear ribonucleoprotein PRP31.
   
 0.993
LOC107552258-2
U6 snRNA-associated Sm-like protein LSm2.
    
 0.993
LOC107587780
U4/U6 small nuclear ribonucleoprotein Prp31-like.
   
 0.993
LOC107548576
Pre-mRNA-processing-splicing factor 8-like isoform X1.
   
 0.991
ENSSGRP00000080948
pre-mRNA processing factor 8.
   
 0.991
ENSSGRP00000028379
U4/U6 small nuclear ribonucleoprotein Prp3-like.
    
 0.990
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.